Single-cell Pediatric Cancer Atlas Portal

Database of uniformly processed single-cell data from pediatric cancer clinical samples and xenografts

Alex’s Lemonade Stand Foundation (ALSF) funded 10 childhood cancer investigators from 8 different institutions working on single-cell profiling to create a publicly available atlas of single-cell pediatric cancer data.

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How is the data processed?

All of the data is uniformly processed with an open source and freely available pipeline which uses alevin-fry, and Bioconductor packages.

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What am I downloading?

When you download from the ScPCA Portal, you will receive both filtered and unfiltered count matrices for each sample along with sample and project metadata.

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Alex’s Lemonade Stand Foundation for Childhood Cancer333 E. Lancaster Ave, #414, Wynnewood, PA 19096 USAPhone: 866.333.1213 • Fax: 610.649.3038