Single-cell Pediatric Cancer Atlas Portal
Database of uniformly processed single-cell data from pediatric cancer clinical samples and xenografts
ScPCA Portal currently has
16Projects
52Cancer Types
500Total Samples
8Labs
Explore the available cancer types.
Acute myeloid leukemia
Adrenocortical carcinoma
Anaplastic astrocytoma
Anaplastic ependymoma
Anaplastic ganglioglioma
Anaplastic glioma
Atypical teratoid rhabdoid tumor
B-cell acute lymphoblastic leukemia
Clear cell sarcoma
Clear cell sarcoma of the kidney
Desmoplastic ganglioglioma
Desmoplastic small round cell tumor
Diffuse midline glioma
Dysembryoplastic neuroepithelial tumor
Dysplastic gangliocytoma
Early T-cell precursor T-cell acute lymphoblastic leukemia
Embryonal sarcoma
Ependymoma
Epithelioid sarcoma
Ewing sarcoma
Focal cortical dysplasia
Ganglioglioma
Ganglioglioma/ATRT
Gastrointestinal stromal tumor
Germ cell tumor
Glial-neuronal tumor
Glioblastoma
High grade glioma
High-grade glioma
Infantile fibrosarcoma
Low grade glioma
Low-grade glioma
Medulloblastoma
Mixed phenotype acute leukemia
Myxopapillary ependymoma
Neuroblastoma
Non-early T-cell precursor T-cell acute lymphoblastic leukemia
Pilocytic astrocytoma
Pilomyxoid astrocytoma
Pleomorphic xanthoastrocytoma
Primitive neuroectodermal tumor
Retinoblastoma
Rhabdoid tumor
Rhabdomyosarcoma
Schwannoma
Spindle sarcoma
Subependymoma
Synovial sarcoma
T-cell acute lymphoblastic leukemia
T-myeloid mixed phenotype acute leukemia
Undifferentiated round cell sarcoma
Wilms tumor
Alex’s Lemonade Stand Foundation (ALSF) funded 10 childhood cancer investigators from 8 different institutions working on single-cell profiling to create a publicly available atlas of single-cell pediatric cancer data.
How is the data processed?Learn More
All of the data is uniformly processed with an open source and freely available pipeline which uses alevin-fry, and Bioconductor packages.
What am I downloading?Learn More
When you download from the ScPCA Portal, you will receive both filtered and unfiltered count matrices for each sample along with sample and project metadata.
Sign up for updatesReceive updates about new datasets and updates to the portal.
